PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 128aa    MW: 13475.7 Da    PI: 7.8699
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912488.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD133.85.7e-113963125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lLsYPr A +V+C++C tV
  XP_010912488.1 39 CGSCRELLSYPRSAVYVQCPCCKTV 63
                    ************************9 PP

2zf-LSD138.71.6e-1277101125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C  lL+YP+GApsVRC++C +V
  XP_010912488.1  77 CGKCCMLLMYPYGAPSVRCSSCSFV 101
                     **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-123666IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-93963IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-875104IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-1077101IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGSSPEAVPP GWENLGPPPP PVSSAPPPPP SPEMGQMVCG SCRELLSYPR SAVYVQCPCC  60
KTVNFVLEAH QVGNVKCGKC CMLLMYPYGA PSVRCSSCSF VTAIGAHNIR PPVSVQQGQL  120
PPPQSPVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912488.15e-86PREDICTED: protein LOL2
SwissprotO654261e-39LOL2_ARATH; Protein LOL2
TrEMBLM5WI024e-46M5WI02_PRUPE; Uncharacterized protein
STRINGVIT_00s0181g00230.t017e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-36lsd one like 2